Mickus found the glitch

When doing the honey harvest quest the honey bottles harvest as intended, but then crafting honeycomb blocks, it only registers every 4th block crafted instead of each individual block, meaning it takes 2048 total honeycomb instead of 512.

When you craft a honeycomb block 4 individual times and then check /dquests you will be credited for one instead of four

I have done this 50 times

The result is the same every time

It should take 4 honeycomb block for each click when crafting one block. This is not mass crafting. Only single crafting, so 8 honeycomb + two individual clicks to craft 2 blocks, etc. so 16 honey comb should make 4 blocks which should give credit for 4 blocks when clicked 4 times instead on once.


UPDATE
After using the crafting table, no more honeycomb blocks are being credited for the quest

 

I wasn't shift clicking, I was crafting one at a time and the crafting table doesn't have a limit to my knowledge. Also it was working every 4th time but then stopped counting